Why did cowpox vaccination protect James Phipps from smallpox?

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James Phipps was protected from smallpox because the cowpox and smallpox viruses share common antigens (proteins).1

When Edward Jenner inoculated Phipps with material from a cowpox lesion, these shared proteins activated the boy’s immune system. This process, known as cross-immunity, allowed his body to recognize and defend against the related smallpox virus when he was later exposed to it. Because the cowpox virus is closely related to the virus that causes smallpox, the initial infection provided effective protection without the severe risks associated with contracting smallpox itself.12